Flapjack—graphical genotype visualization
نویسندگان
چکیده
SUMMARY New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features. AVAILABILITY Flapjack is freely available for Microsoft Windows, Mac OS X, Linux and Solaris, and can be downloaded from http://bioinf.scri.ac.uk/flapjack .
منابع مشابه
An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data
Open source single nucleotide polymorphism (SNP) discovery pipelines for next generation sequencing data commonly requires working knowledge of command line interface, massive computational resources and expertise which is a daunting task for biologists. Further, the SNP information generated may not be readily used for downstream processes such as genotyping. Hence, a comprehensive pipeline ha...
متن کاملBacillus cereus Group Bacteriophage Flapjack Genome Sequence
The Bacillus cereus group bacteriophage Flapjack, a double-stranded DNA (dsDNA) Myoviridae isolate collected from soil collected in Washington, DC, is a member of cluster C3 and encodes an intramolecular chaperone-containing tail fiber protein previously found in Podoviridae and Siphoviridae but not annotated in the Myoviridae.
متن کاملتجزیه پایداری عملکرد ژنوتیپهای گلرنگ (Carthamus tinctorius L.)
The selection efficiency of the most desirable safflower genotypes can be improved by incorporating the graphical methods and statistical analysis. This experiment was carried out to determine grain yield stability of safflower genotypes using the graphical and statistical methods. Twenty safflower genotypes were evaluated in Chachsaran, Choram, Behbehan and Dehdasht using randomized complete b...
متن کاملGraphical Visualization and Navigation of Genetic Disease Information
One of the goals of biomedical scientists in this exciting era of molecular biology is the discovery of novel genes and their relationship to the molecular basis of disease. Part of this information connecting the geno-type to the phenotype is already known and available through hubs such as LocusLink. Although Locus-Link is a valuable resource that organizes curated information around genes an...
متن کاملEvaluation of yield relationships and yield components in maize hybrids using multivariate and graphical methods in Karaj region
Extended Abstract Introduction and Objective: Selection of desirable hybrids compared to other maize hybrids (Zea mays L.) is one of the methods used to achieve high grain yield in maize. Also, the most important morphological features affecting grain yield can be used in the selection and introduction of genotypes. Material and Methods: This study was conducted to investigate the relationshi...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره 26 شماره
صفحات -
تاریخ انتشار 2010